The invention relates to the technical field of health-care foods, in particular to a protein type health-care food composition and a preparation method thereof. Effective components of the composition consist of the following raw materials: poultry egg liquid, soybeans, collagen, cane sugar, linseed oil, honey, traditional Chinese medicine powder, sucrose fatty acid ester, xanthan gum, and microcapsule composite probiotics, wherein the traditional Chinese medicine powder is prepared from the following raw materials of radix codonopsis, haws, dried orange peel, sea-buckthorns and licorice roots. The protein is extracted from natural food materials, animal collagen is added, and the probiotics and traditional Chinese medicine components are effectively combined and jointly achieve the effect, so that the absorption and utilization rate of the protein is increased. A glue milling homogenizing technology is adopted, so that protein granules are changed into granules which are suitable forabsorption by human bodies, and digestion and absorption by the human bodies are facilitated. A secondary embedding technique is used, so that the activity of probiotics is reserved to the maximum extent, a secondary embedding wall material is modified starch resistant to high temperature, and the viable bacteria rate of the probiotics after UHT sterilization is greatly increased.