The invention relates to a penaeus vannamei boone ecological culturing system, which comprises a high level intensive culturing area, a circulating water passage, a shellfish culturing area, a salt-resistant plant area and a water quality treatment area, wherein the high level intensive culturing area, the shellfish culturing area, the salt-resistant plant area and the water quality treatment area are communicated by the circulating water passage. Before the penaeus vannamei boone is put into the system, bdellovibrio bacteria liquid and nitrifying bacteria are added into water of the high level intensive culturing area. During culturing, the traditional Chinese medicine liquid is added into the high level intensive culturing area. The system has the advantages that a culturing water body can be recycled, so the drainage of sewage is reduced, and the pressure on the ecological environment is reduced; the body immunity of the penaeus vannamei boone is improved, and the possibility of the disease outbreak and prevalence of the penaeus vannamei boone is reduced; the shellfishes, aquatic plants, mangroves and seaweeds are put into the system, so the economic benefit of culturing is improved; the whole culturing process realizes the culturing production without using antibiotics, the green and environment-friendly effects of the produced penaeus vannamei boone are realized, the mouth feel is similar to the taste of wild shrimps, and the penaeus vannamei boone is popular in market.