The invention belongs to the field of Yao medicine composition, in particular to a Yao medicine composition, decoction, capsule and application thereof for treating gallstones. The Yao medicine composition for the treatment of gallstones provided by the present invention comprises the following raw materials: ground-boring wind, slate fern, water soaking wind, nine-layer wind, golden sand vine, money grass, mountain gardenia root, plantain, white paper fan, Stone Wei and Citrus Fructus. The yao medicine composition is aimed at treating patients with excess and heat. The yao medicine composition uses earth-boring wind, slate fern and water-soaking wind as the main medicines, which have the effect of removing stones and promoting dampness; Wei, plays the role of expelling fossils, and is used for dispensing medicine; jiupefeng, mountain gardenia root, plantain, white paper fan and aurantium fructus are used for clearing away heat, promoting dampness and dredging stranguria, and are herbal guides. All winds and winds work together to play the functions of dissolving stones and removing stones, clearing away heat and dredging stranguria. It can be seen from the examples that after the patients are treated with the Yao medicine composition provided by the present invention, the effective rate of gallstone treatment is as high as 69.40%, and the gallbladder condition and bile metabolism of the patients are effectively improved.