The liquid chromatography preparation method for pure products of monascin and ankaflavine belongs to a preparing method for pure products, which uses preparative liquid chromatograph, C18 chromatographic column, wherein the column temperature is room temperature, to detect the target components of which the wave length is 233nm or 394nm, the ratio of mobile phase methanol methanol and water is 8:2, the feeding amount for sample is 1ml, the flow speed is 5ml / min, and the collecting retention times are 37. 733min (monascin) and 68. 100min (ankaflavine) respectively, while the continuous production can be realized by matching the equipment with automatic sampling feeder, automatic collector. The technology can be applied to monascus pigment products with monascin and ankaflavine such as monascus rice flour, monascus pigment powder pasted monascus pigment. The preparing process is simple, convenient in operation, rapid and highly effective, has high automaticity, and can prepare the pureproducts of monascin and ankaflavine at the same time with high product purity and big preparing amount.