Provided herein is a method of imaging and analyzing
plant microspores. The method comprises obtaining one or more two-dimensional micrographs of a
microspore population, wherein the
microspore population has not been labeled; sending the one or more two-dimensional micrographs to an
image processing system; segmenting, via the
image processing system, the one or more two-dimensional micrographs to distinguish individual microspores, thereby creating a segmented
population of microspores; obtaining one or more z-stacks of the population of segmented microspores or the population of microspores to be segmented; and using one or more of
pixel intensity information and intensity
signal processing within the one or more z-stacks of segmented cells to find nuclear edges and nuclear geometry and determining whether cells are uninucleate or binucleate based on the nuclear edges and nuclear geometry. Also provided herein is a method of imaging and analyzing
plant microspores comprising determining
microspore viability.