The invention discloses a traditional Chinese medicine composition for treating infectious diseases of the genital system. The traditional Chinese medicine composition comprises 25 parts of Iris tectorum Maxim., 25 parts of radix sophorae flavescentis, 15 parts of Chinese knotweed herb, 15 parts of rhizoma chuanxiong, 15 parts of olibanum, 15 parts of myrrh, 15 parts of radix paeoniae rubra, 15 parts of salviae miltiorrhizae, 15 parts of radix clematidis, 15 parts of cinnamon, 10 parts of angelica sinensis, 10 parts of herba epimedii, 10 parts of cynomorium, 10 parts of herba cistanche, 5 parts of flos carthami, 5 parts of saussurea involucrata, 5 parts of malt selenium and 10 parts of borneol. In addition, the invention further discloses carbon-based paste for treating infectious diseases of the genital system and a preparation method and application of the carbon-based paste. The carbon-based paste is attached onto the perineum to treat the infectious diseases of the genital system through perineum administration, so that compared with a traditional oral medicine, the carbon-based paste is easier to absorb by the genital system, has the functions of detoxifying, sterilization, itching relief, pain relief, dehumidification, necrotic tissue removal, tissue regeneration promotion, inflammation resistance, cancer resistance, Qi tonifying and Yang generation, body resistance strengthening and consolidating, and Yin-Yang regulation, and realizes external treatment and prevention of internal infectious diseases of the genital system.