The invention relates to an electrochemical luminescence bioanalysis flow cell based on magnetic beads. The electrochemical luminescence bioanalysis flow cell comprises a hopper, a sealing piece, a work electrode, a counter electrode, a cover and a magnet, wherein the hopper is provided with a top opening and a bottom opening which are oppositely formed, the sealing piece is arranged at the bottom of the hopper to close the bottom opening of the hopper, the work electrode is arranged on the upper surface of the sealing piece, the counter electrode is embedded in the hopper, the cover closes the top opening of the hopper, and the magnet can move relative to the work electrode. The counter electrode is embedded in the hopper in the axial direction of the hopper in a surrounding mode. The hopper comprises an inner wall and a hopper cavity defined by the inner wall. The cover is provided with a light channel penetrating through the cover. The light channel is communicated with the hopper cavity. The light channel is provided with an optical lens. The cover is provided with a liquid inlet and outlet channel. The hopper cavity is communicated with the outer portion through the liquid inlet and outlet channel. The electrochemical luminescence bioanalysis flow cell based on the magnetic beads is overall miniaturized, the number of ECL reaction reagents for bioanalysis is relatively small, in other words, the consumed ECL reaction reagents are relatively few, no dead volume exists, liquid is rapidly replaced, and fast analysis is achieved.