Provided are a porous silicon-carbon composite, which includes a core including a plurality of active particles, a conductive material formed on at least a portion of surfaces of the active particles, first pores, and second pores, and a first shell layer which is coated on the core and includes graphene, wherein the active particles include a plurality of silicon particles, silicon oxide particles, or a combination thereof, the first pores are present in the core and are formed by agglomeration of the plurality of active particles, and the second pores are irregularly dispersed and present in the core, has an average particle diameter smaller than an average particle diameter of the active particles, and are spherical, a method of manufacturing the same, and a negative electrode and a lithium secondary battery including the porous silicon-carbon composite.