The invention discloses a control system of an LED plant light filling lamp. The control system comprises an LED plant light filling lamp control box, intelligent drivers and LED plant light filling lamp holders. The light filling lamp control box includes a CPLD master control chip, an LCD display panel, a button array or a touch pad circuit, an RAM memory, and a ZIGEBB communication interface; and the control box is used for receiving information transmitted by the intelligent drivers and sending instructions to all the intelligent drivers based on an analysis. The intelligent drivers, which employ red light and blue light twin channel PWM digital driving, comprises CPLD driven control chips, temperature sensors, red and blue brightness sensors and ZIGEBB communication interfaces. Each of the intelligent driver collects brightness and temperature information around the plant and sends the information to the control box as well as receives an instruction from the control box, so that 256-level digital control with a arbitrary proportion of red light to blue light is realized. According to the invention, an all-digital intelligent regulation and control technology is utilized; therefore, when necessary, light filling can be carried out on various plants in same space; meanwhile, centralized control of plant light filling lamps in a large range can also be realized.