Provided is a method of extracting gutta-percha through enzymolysis. One of natural eucommia skin or eucommia leaves or eucommia wing skin is placed in clean water to be cleaned and dried, and moisture content of the eucommia skin, the eucommia leaves, or the eucommia wing skin is enabled to be less than 5%. A compound enzyme which comprises, by mass, 0.27% of cellulose, 0.01% of pectinase, and 0.02% of protease is added, enzymolysis undergoes 1-3 days under stirring at a speed of 500 r/min under 50 DEG C. Mixture after the enzymolysis is filtered, dregs of the filtered mixture are sent to an ultrasonic extraction tank for ultrasound extraction, and glue mixed liquor is produced. The glue mixed liquor is filtered in a grading mode, impurities are eliminated, and the glue mixed liquor with the impurities eliminated is sent to a separation tank. Eventually the gutta-percha is extracted through the method that gutta-percha crystals are precipitated at a low temperature. The method is simple in process, little in pollution, high in yield rate, low in cost, and ideal in effect; the extraction rate reaches more than 95%, and the gutta-percha content reaches 99.9%; and the produced gutta-percha is long in gelatin silk, high in tensile and tearing-proofing physical strength, and capable of being applied to wide fields.