The invention discloses an SRAP 
molecular marker closely linked with male 
sterility genes of tomatoes and a preparation method thereof. The method comprises the following steps: taking purple-stem fertile tomatoes 87-5 as male parents and green-stem male sterile tomatoes at the 
seedling stage as female parents, hybridizing to generate F1 generation, and 
selfing to build an F2 segregation 
population; performing SRAP 
marker analysis on male 
sterility genes ms by adopting a bulked segregant 
analysis method, randomly combining primers before and after SRAP, selecting 544 pairs of primer combinations, and screening between male sterile and fertile pools to obtain two polymorphic markers C10B9_1 and C10B9_4 between two 
DNA pools; performing SRAP marker 
verification on the F2 segregation 
population by virtue of the two markers, wherein linkage analysis discovers that the linkage distance between the marker C10B9_1 and the 
sterility genes ms and the linkage distance between the marker C10B9_4 and the sterility genes ms are 3.3cM and -3.3cM respectively. By virtue of the 
molecular marker, assisted selection of male sterile tomatoes can be performed, the transfer cycle is shortened, the 
transfer efficiency is improved, a tedious program of identifying the sterility of each generation by 
selfing in a transfer process is omitted, conventional 
phenotype selection is transformed into 
genotype selection, and the accuracy and scientificity of selection are improved.