The present invention provides a method of preparing eukaryotic
cellular material from a mucosal sample, which comprises a mixture of mammalian and
prokaryotic cells. The method comprises the steps of: (i) obtaining the mucosal sample; (ii) preferentially lysing the mammalian cells in the mixture into a soluble state; (iii) separating the lysed soluble
cellular material from non-lysed prokaryotic material; and (iv) removing any prokaryotic material in the lysed solution
cellular material. The method yields a sample of mammalian cellular material that is substantially free of
prokaryotic cells and / or cellular material. Also provided are methods of diagnosing a
disease or disorder and treating such diseases / disorders, comprising performing the preparation method described herein and analysing the sample of mammalian cellular material for a marker associated with the
disease or disorder.