The invention belongs to the technical field of aquaculture, and particularly relates to a culture method for improving the stress resistance of snakehead fry. According to the culture method for improving the stress resistance of the snakehead fry, corresponding conditions and feed are controlled in corresponding stages of the fry. Compared with the prior art, the culture method for improving the stress resistance of the snakehead fry has the following advantages that corresponding culture environments are controlled for culture ponds of the snakehead fry according to growing characteristics of the snakehead fry; the snakehead fry can absorb nutrients quickly through cooperation of the culture environments and the high-protein feed, the protein transfer ability is improved, immunity is reinforced, and the growing property is improved; the snakehead fry can grow to 8-9 cm in the 35-day age, and 3-7 days are advanced compared with the prior art; after culture is completed, the snakehead fry are transferred into culture ponds for adult fish culture, quick adaption can be achieved, and the survival rate reaches 97% and over; after culture is completed, fish meat is rich in nutrient, good in taste, high in commodification and remarkable in economic benefits.