The application discloses a method for continuous editing of multi-site chromosomes in eukaryotic cells. The application provides a method for integrating the
genome of eukaryotic cells, comprising: using a knock-in site-specific recombination site (such as noxM) in the
genome of eukaryotic cells, realizing integration of a
large fragment circular DNA molecule at a specific site of the
genome under the action of a knock-in site-specific
recombinase (such as Nigri), and simultaneously using an adjacent knock-out site-specific recombination site (such as loxP or a
mutant thereof), rearranging the related sites under the action of a knock-out site-specific
recombinase (such as Cre), so as to realize continuity of integration. The novel editing platform of high-efficiency site-specific recombination provided by the application can realize directional, continuous and multi-site integration of a
large fragment DNA in eukaryotic cells, and the application has important application prospects in the field of biological technologies including
plant breeding,
animal cell line development,
fungus engineering and the like.