The invention provides a clean vacuum system used for engine plume test research and a vacuuminzing and repressing method thereof, belonging to the technical field of engine vacuum science. The clean vacuum system comprises a low vacuum system, a low vacuum liquid nitrogen cold trap system, a high vacuum system, a high vacuum liquid nitrogen cold trap system, a low temperature pump liquid nitrogen supply system A, a low temperature pump liquid nitrogen supply system B, an air repressing system, a nitrogen repressing system, a container vacuum measuring system, a residual gas analysis system, a liquid nitrogen heat sink, and a liquid nitrogen heat sink and plume adsorption pump. In the clean vacuum system, the vacuum is obtained mainly relying on the clean low vacuum system, the high vacuum system and the liquid nitrogen heat sink, the liquid nitrogen heat sink and plume adsorption pump; various clean vacuum degrees required by the plume test can be obtained, and the highest ultrahigh dynamic vacuum degree of 10<-6> Pa can be obtained. Both the low vacuum system and the high vacuum system are configured with the liquid nitrogen cold trap system which is used for absorbing the oil steam produced by working of a mechanical pump, so that the cleanness of the vacuum container can be ensured.