The invention relates to a method for preparing r-4-chloro-3-hydroxybutanoate by utilizing coupling extraction of an enzyme membrane reactor. The method adopts the enzyme membrane reactor, an organicsolvent charging barrel and a substrate charging barrel, wherein filter membranes are distributed inside the enzyme membrane reactor, one side of the upper end of the enzyme membrane reactor is connected with a feed liquid outlet, one side of the enzyme membrane reactor is provided with an organic solvent outlet, one side of the lower end of the enzyme membrane reactor is connected with a feed liquid inlet, and the other side of the enzyme membrane reactor is provided with an organic solution inlet. The method is simple in process, the emulsification phenomenon in the reaction and extraction processes is decreased, the yield is improved, the loss of an organic solvent is reduced, multiple times of extraction are not needed, the operation is simple and convenient, the large-scale industrialproduction is facilitated, a product can be continuously collected, the inhibition of the product to enzyme or the toxicity of the product to cells is relieved, the molar conversion rate is improved,and thus the industrial production is facilitated.