The invention relates to a method for preparing r-4-chloro-3-hydroxybutyrate ethyl by coupling extraction with an enzyme-membrane reactor, comprising an enzyme-membrane reactor, an organic solvent barrel and a substrate barrel, the enzyme-membrane reactor The interior of the enzyme membrane reactor is distributed with a filter membrane, and the upper end of the enzyme membrane reactor is connected to a feed liquid outlet, one side of the enzyme membrane reactor is provided with an organic solvent outlet, and the lower end of the enzyme membrane reactor is connected to a feed liquid inlet, An organic solution inlet is installed on the other side of the enzyme membrane reactor. The method is simple in process, reduces the emulsification phenomenon in the reaction and extraction process, improves the yield, reduces the loss of the organic solvent, does not need to extract multiple times, is simple and convenient to operate, is conducive to large-scale industrial production, and can continuously collect products. The inhibition of the product to the enzyme or the toxicity to the cell is removed, and the molar conversion rate is improved, which is more conducive to industrial production.