The invention provides a control method of a cell energy storage system inhibiting renewable energy output power fluctuation. The control method is characterized in that: based on a low pass filtering principle, through a first order Butterworth filter, a renewable energy output power value is subjected to filtering, a renewable energy output power object value is obtained, by utilizing charge and discharge control of the cell energy storage system, a difference between the renewable energy output power object value and a renewable energy output power measured value is compensated, and a purpose of inhibiting the renewable energy output power fluctuation is achieved. According to the invention, based on a basic filtering principle, by utilizing a good renewable energy output power inhibition effect and adding of an SOC (state of charge) feedback link, over charge and over discharge of a cell are avoided, innovation is carried out, when adding the SOC feedback link, through adjusting a size of a filtering time constant, an output power of the energy storage system is changed indirectly, thus when inhibiting the inhibiting the renewable energy output power fluctuation, the over charge and over discharge of the cell are effectively avoided, stable operation of the cell energy storage system is maintained, and a service life of the cell is prolonged.