The invention discloses an organic nutrient soil for fruits and vegetables and a preparation method thereof and relates to the technical field of nutrient soil. The nutrient soil contains modified jade red soil, rotten leaf soil, kelp ash, silkworm excrement, refined pond slag, modified biochar, rotten organic matter, wheat bran, boric acid, bamboo vinegar liquid, mannitol, diammonium phosphate and EM bacteria. The preparation method comprises the steps that the rotten leaf soil, the kelp ash, the silkworm excrement, the refined pond slag, the modified biochar, the rotten organic matter, the boric acid, the EM bacteria and the wheat bran are evenly mixed with water; the evenly mixed materials are fermented to obtain an organic mixture; then, the organic mixture and residual raw materials are mixed and granulated. The nutrient soil is high in organic matter content, nutrients are sufficient, the preparation cost is low, the method is convenient to implement, the nutrients are not easy to lose, breathable and draining properties are good, a good root base environment is provided for growth and development of fruit and vegetable plants, the yield and quality of fruit and vegetable products are effectively improved, and the development of the fruit and vegetable industry is promoted.