The invention belongs to the field of atomic force microscopes and relates to a graphene-clad atomic force microscope probe and a manufacturing method and application thereof. The graphene-clad atomic force microscope probe comprises a probe base, a cantilever arm and a tip; the cantilever arm and the tip are provided with a metal layer; the tip is further provided with a graphene layer. The manufacturing method includes the steps of 1, preparing graphene solution, to be specific, adding 5-10mg of graphene to 1mL of water, and performing ultrasonic dispersion for 10min with an ultrasonic cleaner to obtain 5-10mg/mL graphene solution; and 2, preparing the graphene-clad atomic force microscope probe, to be specific, dipping the tip of the atomic force microscope probe with the metal layer on the cantilever arm and the tip, into the graphene solution of the step 1, and performing mechanical stirring for 30-60s before extracting the probe to allow natural airing.