The invention discloses a separation and preparation method of deer serum. According to the method, the deer whole blood obtained after sterile blood sampling from a cleaned and disinfected to-be-sampled deer is left to stand and subjected to centrifugal separation, fibrous protein is removed, then the whole blood is inactivated, the concentration of IgG and the content of glucose are reduced, obtained serum is irradiated with a certain dosage of gamma-rays, viruses and mycoplasmas are removed, the serum is irradiated with ultraviolet rays for sterilization while being filtered by an asbestos-free Chua's filter disc, deer serum filtrate is obtained, finally, the deer serum filtrate is filtered with a filtering membrane, and a finished product, the deer serum, is obtained. The preparation method is simple, convenient, quick, stable in process and suitable for large-scale production; the obtained deer serum does not contain fibrous protein, the concentration of IgG and the content of glucose are low, pollution of the viruses, germs and mycoplasmas can be completely eliminated, and the prepared deer serum can be used for preparation of a culture medium containing serum cells.