The invention discloses an acid-resistant saccharomyces cerevisiae and application thereof. The saccharomyces cerevisiae MTPfo-4 disclosed by the invention is preserved in China Center for Type Culture Collection on June 10, 2020, and the preservation number is CCTCC M 2020199. According to the invention, exogenous malic acid is used as stress pressure, the S. Cerevisiae acid-resistant mutant strain MTPfo-4 is obtained through directed evolution screening in a laboratory, and the minimum tolerance pH is 2.44 which is also the minimum tolerance pH of currently reported saccharomyces cerevisiae.The mutant strain MTPfo-4 which is tolerant to various organic acids at the same time has the advantage that the tolerance to exogenous malic acid is increased to 86.8 g / L. The obtained mutant strainMTPfo-4 is further identified, is stable in character and good in growth, and can tolerate various organic acids (lactic acid, malic acid, succinic acid, fumaric acid, citric acid, gluconic acid andtartaric acid) at the same time, also has strong tolerance to inorganic acids (HCl and H2PO3), which is difficult to achieve in current S. Cerevisiae research reports. The acid-resistant saccharomycescerevisiae is expected to be used for producing various short-chain organic acids in an acid-resistant chassis cell factory.