The invention discloses a method for applying a multi-axis robot to cell factories to prepare biological products. The problems that in the prior art, a large amount of manual operation is needed, theconstant temperature room environment is difficult to control, thus the adverse effect on growing and amplification of cultures is caused, and the production cost is high are solved. A plurality of sets of culturing frames, arm operating openings and pipeline connecting openings cooperate with the multi-axis robot to achieve operations such as grabbing, moving, overturning and waggling of specialstructure cell factory frames to replace operating processes adopting manpower and other fixed equipment, wherein the culturing frames are sequentially arranged in a fan shape in a constant temperature room, and the arm operating openings and the pipeline connecting openings are formed in an observation window between the constant temperature room and an operation room. According to the method, the cell factories are intensively cultured and operated, operation does not need manual pushing and does not need to leave the constant temperature room, thus the culturing environment is easy to control, changing of the culture temperature is small, modular efficient production is facilitated, the product consistency is good, the pollution rate is low, and the overall operating cost can be saved.