The invention provides a device for subpackaging culture mediums. According to the device for subpackaging the culture mediums, culture dishes comprising dish covers and dish bottoms descend along a first pushing rod, a clamping part retracts inwards to clamp the dish covers tightly, the dish bottoms continue to descend to a horizontal rotating tray of culture dish separating equipment, and the first pushing rod continues to descend to the position below the horizontal rotating tray; the dish bottoms and the dish covers rotate together along with the culture dish separating equipment, and the horizontal rotating tray rotates to the position above a second pushing rod; after the culture mediums are injected, the second pushing rod pushes the dish bottoms upwards, so that the dish bottoms are made to make contact with the dish covers; the clamping part is loosened, the dish bottoms are covered with the dish covers, and the culture dishes injected with the culture mediums are recovered. According to the device for subpackaging the culture mediums, the continuity, speediness, quantification and the automation of subpackaging can be achieved, and the compatibility to the outlines, the diameter sizes and heights of the culture dishes is good; particularly, the device can be used for subpackaging novel culture dishes of which the diameter of dish bottoms is larger than the diameter of dish covers.