The invention relates to a citrus fruit grain processing production method, and the processing production method is carried out according to the following steps: (1) the pretreatment of raw materials; (2) cleaning of the raw materials; (3) raw material launder alkali treatment; (4) heat separation, to be more specific, water of alkali-treated citrus slices is filtered, the alkali-treated citrus slices are transported to an interlayer pot with stirring for heat separation, after the citrus slices enter into the interlayer pot, 90-95 DEG C hot water is injected, the mass ration of citrus slices and water is 1:1, when the temperature of the water in the interlayer pot reaches 48 to 50 DEG C, the interlayer pot is began to be stirred and heated, when the temperature of the water in the interlayer pot reaches 70 to 75 DEG C, the heating is stopped, each pot of the material is stirred for 7 to 10 minutes, when the material in the interlayer pot rotates from fast to slowly or does not rotate, hot water is supplemented, when capsules show orange yellow or the citrus slices are separated completely, stirring is stopped, the material is discharged into a buffer pool for standby use; (5) screening; (6) impurity removal; and (7) light inspection, weighing, pre scalding, filling, sterilization and storage. The method has high production efficiency and good product controllability, and produced fruit grains are uniform in quality, and very low in impurity content.