The invention discloses a high-temperature critical treatment method and system for dioxin in waste incineration flue gas. A first smoke pipe is mounted at the top of an incineration tower of the high-temperature critical treatment system for the dioxin in the waste incineration flue gas, and the end, away from the incineration tower, of the first smoke pipe is connected to one end of a spraying mechanism; a second smoke pipe is mounted at the top of the spraying mechanism, the end, away from the spraying mechanism, of the second smoke pipe is mounted at the top of one side of a cyclone separator in the tangential direction, a third smoke pipe is mounted at the top of the other side of the cyclone separator, and the end, away from the cyclone separator, of the third smoke pipe is connected to one end of an adsorption box; and the other end of the adsorption box is connected to an air inlet of an air blower, and an air outlet of the air blower is connected to one side of a smoke exhaust pipe. According to the high-temperature critical treatment system for the dioxin, generation of the dioxin in the waste incineration process can be restrained, the generated dioxin is effectively removed, smoke generated by waste incineration can easily reach the emission standard, the treatment effect of the dioxin is good, and the treatment cost is low.