The invention provides an independently controllable automobile air-conditioning system with double evaporators and a control method of the automobile air-conditioning system. Energy conservation and emission reduction are realized while automobile internal comfort is guaranteed, and good economic benefit is realized. The automobile air-conditioning system with the double evaporators comprises a compressor, a condenser, a liquid storage dryer and an air-conditioning controller, the compressor, the condenser and the liquid storage dryer are successively serially connected via a pipeline, the liquid storage dryer is connected with two branches via two branched pipelines, one of the two branches is connected with a front electromagnetic valve, a front expansion valve and a front evaporator, the other branch is connected with a rear electromagnetic valve, a rear expansion valve and a rear evaporator, the front evaporator and the rear evaporator are connected with the compressor via a pressure balance device, and the front electromagnetic valve, the rear electromagnetic valve and the compressor are controlled by the air-conditioning controller. The air-conditioning system comprises the two evaporators, is high in refrigerating output and fast in cooling, can keep fine automobile internal comfort, saves energy and has good economic benefit. Operation of the two evaporators is controlled independently.