The invention discloses a method for second mining a mining-stopping line coal column in a super thick coal layer. The method comprises the following steps that (1), positions of a coal column second mining working surface transporting gate trough and a rail gate trough are stimulated; (2) comprehensive probing is conducted on an original working surface goaf area where the super thick coal layer mining-stopping line coal column is located, and potential safety hazard is removed; (3) a roadway in the propelling direction of the coal column second mining working surface is dug at the upper part of the super thick coal layer, and the roadway is filled; (4) a coal column second mining working surface mining returning roadway and a affiliated oblique roadway are dug, so that the coal column second mining working surface mining returning roadway and the affiliated oblique roadway form a completed producing system, and the coal column second mining working surface is arranged; (5) a bottom plate of the roadway is drilled from top to bottom for using as a filled pipeline; (6) filling paste is prepared, the filling paste is evenly injected into one side, close to the original working surface goaf area, of the transporting gate trough along the filled pipeline; and (7) comprehensive mining is conducted on the coal column second mining working surface. According to the method for second mining the mining-stopping line coal column in the super thick coal layer, the compressed coal amount is reduced, waste of coal resources is avoided, the economic benefits of enterprises are improved, and the service life of mines and mining areas is prolonged.