The invention discloses a protein fingerprint model formed through drawing according to mass-to-charge ratios of a plurality of proteins and protein crest strength coefficients, wherein the mass-to-charge ratios are 1097, 1777, 2551, 2988, 3381, 3708, 5492, 6007, 7144 and 8012. The invention further discloses a protein detection and analysis system based on the model and a laser desorption/ionization time of flight mass spectrometry detection method for anthrax. In the detection method, protein spectrums of samples are compared with the model to detect the anthrax in the samples qualitatively. The protein fingerprint model contains specific protein spectrum information of the anthrax, is provided with a specific recognition function, and can be applied to commercialized detection and analysis systems of the anthrax. According to the protein fingerprint model, the system and an application thereof for the anthrax, the detection method which is high in sensitivity, specificity and detection rate is provided for the anthrax and is particularly suitable for port check and inspection departments.