The invention discloses a microscomic numerical model generation method considering rock structure characteristics and mineral composition. Microscopic structure characteristics and mineral composition of rock can be considered, a microscopic numerical model reflecting the rock structure characteristics and the mineral composition is established, and rock mechanics numerical simulation can be carried out more truly. The method comprises the following steps: carrying out rock structure characteristic analysis on a rock sample to obtain the size, form, mineral type and other information of mineral particles; simplifying the mineral particles with irregular shapes into balls with reduced sizes, and rearranging the particles by adopting a particle size expansion method, and obtaining a compact structure; secondly, extracting information such as spatial positions and sizes of particles, and performing Voronoi graph-based spatial region division on the particle assembly; and finally, performing finite element mesh division on the obtained Voronoi polycrystal structure, and inserting thickness-free interface units into mineral particle boundaries and the interiors of particles to generate a finite element numerical model capable of reflecting a rock structure and a lithofacies structure.