The invention provides a digital dynamic calibration system for an electric vortex sensor, which is for calibrating dynamically an electric vortex sensor, and is essentially comprises a hi-speed motor, a magnetic bearing system, a dynamic calibrating disc, an A/D conversion chip, a FPGA chip, a USB bus and an up-level unit. The magnetic bearing system, in conjunction with the hi-speed motor, drives the dynamic calibrating disc to rotate at high speed, generate hi-frequency excitation signals to be input to the sensor to be measured. A photoelectric sensor senses the reference position on the dynamic calibrating disc, generates a reference pulse signal for triggering the A/D conversion chip controlled by the FPGA chip to carry out data sampling of the output signals from the sensor, which first go through A/D conversion by the A/D conversion chip, then are sent into the FPGA chip for data acquisition and processing, sent to the up-level unit through the USB bus; finally the indexes on the dynamic frequency of the electric vortex sensor are got. The invention is especially applicable for the dynamic calibration of the electric vortex sensors used in maglev systems.