The invention discloses a preparation method of a hexaazaisowurtzitane crystal. The preparation method of the hexaazaisowurtzitane crystal comprises the following steps of: carrying out wet-crushing onto explosives until the particle dimension is 0.1 micron to 5 microns, centrifuging, washing, freezing and drying the crushed materials; placing the material in the step I to a solvent for carrying out ultrasonic treatment, heating, re-filtering, washing and drying under the standing condition or the stirring condition to obtain a hexaazaisowurtzitane explosive crystal. According to the preparation method of the hexaazaisowurtzitane crystal, the high-quality explosive crystal product, which is prepared by a preparation technology adopting a two-step process including mechanical crushing and solvent thermal-induction growing, is regular in particle shape, jewel-shaped, uniform in particle dimension, smooth in surface, less in internal defects of the crystal, and lower in mechanical sensitivity. Besides, the preparation method of the hexaazaisowurtzitane crystal is simple in process, gentle in reaction conditions, good in reproducibility, high in yield and suitable for large-scale industrial production.