The invention belongs to the technical field of macromolecular materials, and in particular relates to a preparation method for biodegradable blocked copolyester. The preparation method comprises the following steps: carrying out esterification reaction between adipate and 1,4 butanediol in the presence of catalyst, wherein the reaction time is 3 to 5h, nitrogen is adopted for protection, the reaction pressure is between 0.1 and 0.8MPa and the reaction temperature is between 130 and 180 DEG C during a first stage; and the reaction time is 1.5 to 5h, the reaction pressure is between 0.3 and 0.6MPa and the reaction temperature is between 150 and 200 DEG C during a second stage so as to generate polybutylene adipate; and carrying out ester exchange reaction of dimethyl terephthalate (DMT) and 1,4 butanediol in the presence of catalyst, wherein the nitrogen is adopted for protection, the reaction time is 2 to 5h, the reaction pressure is between 0.1 and 0.7MPa and the reaction temperature is between 150 and 170 DEG C so as to generate polybutylene terephthalate (pbt); and mixing both prepolymers and carrying out melt copolycondensation reaction under negative pressure, wherein the vacuum degree is controlled to be between 0 and 200Pa, the reaction temperature is between 210 and 260 DEG C and the reaction time is 3 to 8h. The preparation method carries out esterification reaction and ester exchange reaction, and the esterification reaction has two stages so as to effectively reduce secondary reaction of 1,4 butanediol. A prepared product has a characteristic viscosity number above 1.2dl/g, a melting point controlled between 100 and 140 DEG C, a tensile strength between 18 and 37MPa and a breaking elongation ratio from 800 to 1,500 percent.