The invention relates to the technical field of planting, and particularly relates to a method of planting the herbal coffee bean. The method comprises the steps of the soil lot treatment phase, the seeding phase and the field management phase, the seeding phase comprises seed selection, seed preparation and planting, the field management phase comprises fertilizer topdressing and pest control. The herbal coffee combined with fertilizers is mainly prepared from, biochemical fulvic acid, plant ash, potassium permanganate, chitosan hydrolysate, gastrodia elata, fructus forsythiae, selenium enrichment nutritional agent, poly-aspartic acid, urea, cotton, superphosphate, diammonium phosphate, and potassium sulfate. The method of planting the herbal coffee bean can improve the survival rate of seedlings, when the herbal coffee bean is combined in use with fertilizer, the herbal coffee bean is high in selenium enrichment content and yield, high in survival rate, and low in the prevalence rate.