The invention aims to provide a joint automatic control device for inner flaps/outer flaps of a hydrofoil catamaran. The joint automatic control device comprises a catamaran. Two sheets are respectively mounted at the left end and the right end of the lower side of the catamaran, a front hydrofoil is mounted at the front ends of the lower sides of the two sheets, a rear hydrofoil is mounted at the rear ends of the lower sides of the two sheets, a first outer flap, a second outer flap, a first inner flap and a second inner flap are respectively mounted at the rear end of the front hydrofoil by the aid of a first connecting shaft, a third outer flap, a fourth outer flap, a third inner flap and a fourth inner flap are respectively mounted at the rear end of the rear hydrofoil by the aid of a second connecting shaft, and the first outer flap, the second outer flap, the third outer flap, the fourth outer flap, the first inner flap, the second inner flap, the third inner flap and the fourth inner flap are respectively connected with respective servo motors. The joint automatic control device has the advantages that the joint automatic control device is simple in structure and reasonable in design, multifunctional and multi-objective cooperative control is implemented, and the safety, the seaworthiness and the maneuverability of the hydrofoil catamaran are improved; the front hydrofoil and the rear hydrofoil are respectively connected with the two sheets of the hydrofoil catamaran, so that the mechanical structural strength is improved.