The invention discloses a method for monitoring nitrogen and phosphorous leaching loss of paddy soil under a fertilizing condition. The method includes the following steps: A, selecting an experimental field, namely selecting paddy soil for measuring; B, arranging small areas, namely setting the number of the small areas according to experiment processing number and repeating number; C, constructing the small areas; D, mounting seepage pipes, namely monitoring nitrogen and phosphorous leaching loss conditions of percolate at different depths; E, fertilizing the small areas, namely mixing fertilizer with soil after the field experimental small areas are built; F, raising and planting seedlings, namely selecting rice varieties and enabling planting space and number of each small area to be identical; G, irrigating the small areas, namely opening small grooves between the small areas and main grooves during irrigating of the small areas and watering towards the small areas; H, intertilling and weeding; I, preventing and controlling plant diseases and insect pests; J, harvesting paddy rice; K, sampling the percolate; L, testing nitrogen and phosphorous of the percolate, namely testing total nitrogen, nitrate nitrogen, ammonia nitrogen, total phosphorous and inorganic phosphorous in the percolate. The method is high in accuracy, high in operability, high in practicability and suitable for realtime testing of nitrogen and phosphorous leaching loss of the paddy soil of various types.