The invention relates to a method for improving stock grafting through scion and belongs to the technical field of biological engineering. The method comprises the following steps: 1) cultivating a stock: choosing a robust seedling of a plant having subterraneous stems, tubers, and roots as the stock; 2) scion: choosing an excellent foliage branch of the same crop as scion; and 3) grafting. By using the method for improving stock grafting, the mutual effect of scion and stock is utilized, thereby taking full advantages of the stock that the seedling life is long, the root grows well, the capability of absorbing water and fertilizer is strong, the stress resistance is strong, the cultivation management is simple, the growing power is high, the seedling is easily propagated, and the like. The advantages of scion photosynthesis and secondary metabolite composition are fully taken; the quality and output of subterraneous stems, tubers, and roots of the improved stock can be enhanced by scion plant, thereby being high in application value for increasing the output and quality of the root, stem or tuber plant crops. The method for improving stock grafting can be conveniently operated and has the advantages of low cost, high efficiency and stability, accuracy, high speed, and the like.