The invention discloses a self-neutralization device of an ionic liquid thruster, which is realized through control of a feedback circuit, and the feedback circuit is composed of a high-voltage isolation circuit, a sampling circuit, a control circuit, an electricity storage capacitor, an isolation resistor and the like. Accumulated charges are limited to a thruster and a high-voltage output end through the high-voltage isolation circuit, the charges are captured through the electricity storage capacitor and converted into voltage signals at the two ends of the capacitor, and the sampling circuit measures capacitor voltage through a voltage dividing method and transmits the capacitor voltage to the control circuit. The high-voltage isolation circuit changes the voltage value or the duty ratio of an output signal under the adjustment of the control circuit, so that the emission proportion of positive and negative ions of the thruster beam is changed, and the originally accumulated charge quantity is balanced. According to the device, the positive and negative ion emission proportion of the ionic liquid thruster can be autonomously balanced, self-neutralization work of the thruster can be maintained, the problem that a spacecraft is electrified due to charge accumulation is prevented, ionic liquid electrochemical reaction caused by charge imbalance is avoided, and the service life of the ionic liquid thruster is remarkably prolonged.