The invention belongs to the technical field of agriculture, relates to a sexual reproduction technology of plants, and particularly relates to a sexual reproduction method of gastrodia elata. The method sequentially comprises the nine steps of seed selection, germination accelerating, artificial pollination, fungus material preparation, seed dressing, sowing, transplantation of fungus materials for culture, cultivation and harvesting. By means of the sexual reproduction method of the gastrodia elata, the problems that in the existing gastrodia elata planting process, genetic depression occurs, the germination rate is low, seeds are prone to microbial contamination, the zero-generation quality is low, and the product yield is low are solved. In the cultivation process of the gastrodia elata, the microbial contamination rate is low, the growth vigor of target fungi is good, the germination rate is high, the zero-generation quality is good, high and stable yield is achieved, and the product quality is good.