The traditional column chromatography process for purifying recombinant proteins has high production costs and cumbersome steps. Non-chromatographic purification methods based on affinity tags can reduce costs and increase target protein yields, but the cost of tag removal is high. In order to solve the above problems, the present invention proposes a simple and efficient purification method that only needs centrifugation and cracking steps. The method uses CipA inclusion body protein and intein protein (Synechocystis sp. PCC6803 DnaB, Ssp DnaB), and utilizes the self-assembly function of CipA and the self-cleavage function of DnaB under weak acid conditions to realize protein purification. The target protein can be any protein to be expressed and purified, and the purity after purification can reach more than 95%. In addition, the present invention also optimizes the connecting peptide between CipA and DnaB, which further improves the cleavage efficiency of DnaB and reduces the influence of CipA on the activity of the target protein. This method has the potential to be applied to the industrial production of enzymes. Key words: protein purification method, inclusion body protein CipA, self-cleavage protein DnaB.