An intermediate-depth part geothermal energy heating system comprises a vertical well vertically extending to the underground part by 2,000 m, and a butt joint well communicating with the vertical well, wherein the vertical well and the butt joint well are the same in depth. After the butt joint well is vertically downwards dug by 1,700 m, an arc deflection section is arranged to be connected with the part, at the underground position of 2,000 m, of the vertical well. Communicating casing pipes are laid in the vertical well and the butt joint well. The casing pipe at an outlet of the vertical well is connected with the heat absorbing side of a ground source heat pump through a water pump. An outlet in the heat absorbing side of the ground source heat pump communicates with the casing pipe in the butt joint well to form a closed circulation loop, and the heat exchange side of the ground source heat pump is connected with a tail end user. The vertical depth of the casing pipes is increased to 2,000 m from the conventional depth of 100 m, the vertical well and the butt joint well are effectively connected in the deep soil, a horizontal heat exchange pipeline is established at the underground position of 2,000 m, a closed circulation system is adopted, softened fresh water efficiently exchanges heat with deep rock soil, and the deep geothermal energy is extracted to be used for building heat supply.