The invention discloses a method for acclimatizing tissue culture seedlings of transgenic tomatoes. The method comprises the following steps that after the transgenic tissue culture seedlings strongly grow in a rooting culture medium, the height of the seedlings ranges from 4cm to 5cm, and the roots of the seedlings are developed, an opening sealing film of a culture bottle can be opened, 0.5cm to 1cm distilled water is added, the seedlings are acclimated for 2 days in an illumination incubator at the temperature of 25 DEG C, the seedlings are then taken out, residues of the culture medium on the roots are cleaned, the seedlings are transplanted to a nutrient soil flowerpot which is disinfected through high temperature and thoroughly watered, and nutrient soil is composed of flower organic soil, vermiculite and perlite according to the ratio of 2:1:1; the seedlings are covered with a plastic film, so that moisture is preserved and the seedlings are cultured for one week in the illumination incubator at the temperature of 25 DEG C and watered for once through MS culture liquid which is diluted by 10 times during the week; when fresh leaves are grown from the seedlings, the plastic film can be removed; in the transplanting process, the seedlings and the culture soil in the flowerpot are moved to a field together, water and fertilizer management is conducted normally, and the survival rate reaches 100%.