The invention discloses an aquaculture sewage treatment method, which specifically comprises the following steps of: firstly, feeding an microbial agent into sewage discharged from a culture pool, then introducing the sewage into a flocculation basin, and continuously feeding flocculants under the condition of continuous air aeration, wherein the hydraulic retention time is 15-30 minutes; and introducing the sewage subjected to air aeration and flocculation treatment into a membrane device under the action of a constant-flow pump to complete filter treatment, directly discharging permeated clear water or returning the permeated clear water to the culture pool for reutilization, and returning concentrated sewage to the flocculation basin for continuous treatment or directly discharging partial of the concentrated sewage. According to the aquaculture sewage treatment method, a biological treatment technology, a flocculation technology and a modern membrane filtration technology are organically combined, so that water quality is guaranteed, the production efficiency is increased, the production cost is greatly reduced, the advantages of simple process, stable system, small occupancy, low operation cost and the like are achieved, and bacteria and suspended matters in the sewage can be removed, and the purpose of safety recycling is achieved.