The invention discloses a fertilizer used for agricultural production and a use method of the fertilizer. The fertilizer is prepared from the following raw materials by weight: 90-110 g of organic chlorella powder, 90-110 g of natural geological mineral powder, 180-220 g of low-carbon bacillus subtilis, and 450-550 g of water. The fertilizer disclosed by the invention improves nutrition and quality of rice, the organic rice is fragrant, has a high fragrant smell and is free from washing, the fertilizer reduces pesticide residues, the pollution-free organic rice is obtained, and the fertilizerimproves a content of microelements such as rice protein, amino acids, fat, algal polysaccharides, fibers, chlorophyll, algal protein, gamma linolenic acid, SOD, calcium, magnesium, iron, zinc, potassium, manganese, vitamin E (B1, B2, By, Bs, B1) and inositol.