The invention provides a
protein mutation drug resistance prediction method and
system based on multi-task
deep learning, and the method comprises the steps: obtaining evidence entries from a CIViC / PharmGKB
library, carrying out the preprocessing, and supplementing
pathogenicity tags to build a double-tag corpus; the
protein is characterized by using a
mutation site neighborhood local one-bit code and an evolutionary comparison site specific scoring matrix PSSM dual path, the length is standardized, and the
drug is mapped and spliced by using a PubChem881-dimensional
fingerprint; constructing a Transform
cascade model, firstly transfusing the
pathogenicity probability, then splicing with the intermediate characterization to transfuse the
drug resistance probability, and carrying out combined loss training; and dividing
data set evaluation, and analyzing multiple mutations in combination with attention. The performance of the method is superior to or not lower than that of an existing tool, a high-resolution three-dimensional structure is not needed, accurate prediction can be achieved only through a small amount of input features, meanwhile, whether
drug reaction is driven by
mutation pathogenicity or not can be determined, differentiated medication strategies are formulated for different types of patients, and the method has good cross-center migration potential and is suitable for clinical application. The method can be widely applied to scenes such as accurate medication
decision making,
drug resistance early warning and drug redesign.