The invention provides an environmentally friendly galvanized metal repair agent and a preparation method thereof. The environmentally friendly galvanized metal repair agent is prepared from, by mass, 15-20 parts of attapulgite, 20-30 parts of amino clay, 1-7 parts of aluminum distearate, 4-8 parts of ceramic ultrafine powder, 4-15 parts of composite nano-powder, 3-6 parts of sodium potassium silicate, 3-5 parts of gamma-thionyl trimethoxysilane, 2-6 parts of gamma-aminopropyl triethoxysilane, 12-18 parts of waterborne polyurethane, and 3-5 parts of poly trimethoxysilane. The preparation method of the environmentally friendly galvanized metal repair agent comprises the steps of mixing, heating, kneading, grinding and the like, the prepared environmentally friendly galvanized metal repair agent has the advantages of being good in abrasive resistance, anti-corrosion and lubricating, high in metal bonding strength, and long in service life.