The application discloses a SSR
molecular marker primer related to Chinese chives
dormancy and a detection method and application thereof. In view of the problems that traditional Chinese chives
dormancy trait identification relies on field morphological observation for 4 months, is inefficient and lacks special molecular markers, 7 specific SSR primers (SSR005 / 170 / 249 / 325 / 423 / 478 / 610) are developed based on cross-species
genome resequencing (taking Chinese onion as a
reference genome, and the alignment rate is 18.76%-18.89%) for the first time. Through the establishment of a matching detection
system: CTAB method for
rapid DNA extraction, optimization of the PCR
system (20 muL contains 30 ng of template
DNA, 0.4 U of Taq
enzyme, 0.2 muM of primer, 0.2 mM of Mg 2+ 2.0 mM of dNTPs, 57 DEG C annealing), 8%
polyacrylamide gel electrophoresis combined with silver
staining development, the
dormancy trait can be accurately identified within 7 days. For example, the SSR423 primer has no band at 177 bp, and the non-dormant / dormant
germplasm cannot be distinguished. The detection results of 52 germplasms (such as dormancy
germplasm 21-1 and non-dormancy
germplasm 22-7) are consistent with the field phenotypes at a rate of 100%.