The invention discloses an SSR
molecular marker primer related to leek
dormancy as well as a detection method and application of the SSR
molecular marker primer. Aiming at the problems that the traditional
dormancy character identification of Chinese chives depends on field morphological observation as long as 4 months, the efficiency is low and special molecular markers are lacked, seven pairs of specific SSR primers (SSR005 / 170 / 249 / 325 / 423 / 478 / 610) are developed based on cross-species
genome re-sequencing (taking green Chinese onion as a
reference genome, and the comparison rate is 18.76%-18.89%) for the first time. The method comprises the following steps: establishing a matched detection
system: rapidly extracting
DNA (deoxyribonucleic acid) by a CTAB (cetyltrimethyl
ammonium bromide) method, optimizing a PCR (
polymerase chain reaction)
system (20 mu L of
DNA containing a template of 30 ng, 0.4 U of Taq
enzyme, 0.2 mu M of primer, 2.0 mM of Mg < 2 + >, 0.2 mM of dNTPs, and annealing at 57 DEG C), and performing 8%
polyacrylamide gel electrophoresis combined with silver
staining development, thereby accurately identifying the
dormancy character within 7 days. For example, the SSR423 primer has non-differentiated non-dormancy / dormancy
germplasm at 177bp, and the
coincidence rate of the detection result of 52
germplasm (such as dormancy
germplasm 21-1 and non-dormancy germplasm 22-7) and the field
phenotype reaches 100%.