The invention discloses a method for preparing organic calcium with eggshells. The method includes the steps of 1), breaking; 2), performing enzymolysis; 3), fermenting; 4), extracting; 5), packaging. The method for preparing the organic calcium with the eggshells is simple and efficient, large-scale production can be performed, extraction rate reaches 86.36%, content of calcium lactate is 93.62%, calcium gluconate is 5.46%, and revenue is increased by 15.6%. Residue protein can be decomposed by directly adding protease into the broken eggshells, and impurities in an eggshell solution can be reduced; the eggshell solution subjected to enzymolysis is fermented via lactic acid bacteria, macromolecular impurities are decomposed, lactic acid is produced, calcium ions in the calcium carbonate is separated out, and formation of the calcium lactate is facilitated; the solution is subjected to secondary crystallization to separate out organic calcium crystals, and extract rate of the organic calcium is increased; the abandoned eggshells are fully utilized and made profitable, low cost is achieved, cost is saved, poisonous reagents are not used during the preparation, residues of the reagent cannot be caused, and the method is healty and environment friendly.