The invention discloses high-strength and high-toughness waterborne antifouling metal baking paint and a preparation method thereof, and discloses an epoxy-hyperbranched organic silicon modified acrylic acid polyurethane resin and preparation method thereof. The high-strength and high-toughness waterborne antifouling metal baking paint comprises the epoxy-hyperbranched organic silicon modified acrylic acid polyurethane resin, polyester resin, saturated polyester polyols, cross-linking agents, adhesion promoters, wetting leveling agents, ethylene glycol tert-butyl ether, neutralizers, catalysts, flash rust inhibitors, defoaming agents and the balance water. The invention further discloses a preparation method of the high-strength and high-toughness waterborne antifouling metal baking paint.The waterborne antifouling metal baking paint has the advantages that the paint is high in hardness and toughness, resistant to water, chemistry, oil, abrasion, weather and salt fog and the like. Thepaint film performance of the waterborne metal baking paint is greatly improved, and use range is greatly widened.