The invention discloses a method for separating and purifying 1, 6-
fructose diphosphate from a 1, 6-
fructose diphosphate reaction liquid, which comprises the following steps: adjusting the pH value of the 1, 6-
fructose diphosphate reaction liquid to be acidic, performing
microfiltration, collecting permeate liquid, performing first
electrodialysis desalination to obtain a reaction liquid after first
desalination, loading the reaction liquid to strongly basic anion exchange resin, and performing adsorption,
impurity washing and
elution to obtain the 1, 6-fructose diphosphate. The method comprises the following steps: adding a
sodium salt solution into an eluent containing 1, 6-fructose diphosphate, collecting the eluent containing 1, 6-fructose diphosphate, carrying out second
electrodialysis desalination to obtain a 1, 6-fructose diphosphate solution, carrying out
nanofiltration concentration, collecting a concentrated solution, crystallizing, carrying out suction
filtration, washing, and
drying to obtain the 1, 6-fructose diphosphate existing in a
sodium salt form. The
electrodialysis technology is high in desalination efficiency and high in target substance yield; the resin in the
chromatographic separation section can be recycled after being regenerated, so that the separation cost is low; the purity of the fructose 1, 6-diphosphate existing in the form of
sodium salt obtained by the separation and purification method exceeds 99.0%, and the total yield exceeds 95%.