There is described herein a method of prognosing or classifying a subject with a
Myeloproliferative Neoplasm (MPN) comprising: (a) determining the expression level of at least 10 genes in a
test sample from the subject selected from the group consisting of SPP1, CEACAM6, GJA1, IGSF10, IGFBP2, COL4A5, LYVE1, MTIE, EMP1, XIST, DLK1, TPSAB1, TIMP3, CLC, MS4A1, ENKUR, ALOX12, KNDC1, HLA-DQB1, GAS2, CLEC2L, BEND2, CDH7, and NT5E; and (b) comparing expression of the at least 10 genes in the
test sample with reference expression levels of the at least 10 genes from control samples from a reference cohort of patients; wherein a difference or similarity in the expression of the at least 10 genes in the
test sample and the reference expression levels is used to prognose or classify the subject with MPN into a low risk group or a
high risk group for worse survival.